- Author:
- Soroush Safaei <ssaf006@aucklanduni.ac.nz>
- Date:
- 2017-03-03 16:24:12+13:00
- Desc:
- adding new documentation
- Permanent Source URI:
- https://staging.physiomeproject.org/workspace/297/rawfile/fcf7202d0cce6018d65ca99164a10dd76dc9ef62/BG/AcidBase Notes/AB.tex
\documentclass[10pt,a4paper]{article}
\usepackage[utf8]{inputenc}
\usepackage{graphicx}
\usepackage{lmodern}
\usepackage{fourier}
\usepackage{amsfonts,amsmath,amsthm,amssymb}
\graphicspath{{Figures/}}
\usepackage[left=2cm,right=2cm,top=2cm,bottom=2cm]{geometry}
\begin{document}
\author{Soroush Safaei}
\title{Acid-Base Physiology}
\date{}
\maketitle
\section{Bond Graph Modelling}
\begin{center}
\includegraphics[scale=1.5]{Figures/BG.png}
\end{center}
\subsection{The biomolecular cycle}
\begin{center}
\includegraphics[scale=0.75]{Figures/Boron.png}
\end{center}
\subsection{Causal analysis}
\subsection{Parameters}
\begin{table}[ht]
\caption{Reaction Parameters}
\centering
\begin{tabular}{ccccc}
\hline \hline
Reaction & $k_f$ & $k_r$ & $K_{eq}=k_f/k_r$ & $\kappa$ \\
\hline
Re1 & $0.0375$ & $1$ & $7.94\mathrm{e}{-7}$ & $0.5071$ \\
Re2 & $567.8$ & $1$ & $5.6\mathrm{e}{-10}$ & $289136$ \\
Re3 & 100000 & 20 & & \\
Re4 & 100000 & 20 & & \\
Re5 & 100000 & 20 & & \\
\hline
\end{tabular}
\label{table:reaction}
\end{table}
\begin{table}[ht]
\caption{Species Parameters}
\centering
\begin{tabular}{cc}
\hline \hline
Species & $K$ \\
\hline
$\mathrm{{CO}_2} (int)$ & $0.0375$ \\
$\mathrm{{HCO}^-_3} (int)$ & $567.8$ \\
$\mathrm{{H}^+} (int)$ & 100000 \\
$\mathrm{{CO}_2} (ext)$ & 100000 \\
$\mathrm{{HCO}^-_3} (ext)$ & 100000 \\
$\mathrm{{H}^+} (ext)$ & 100000 \\
\hline
\end{tabular}
\label{table:species}
\end{table}
\section{Simulation}
\begin{center}
\includegraphics[scale=1.5]{Figures/Boron-Simulation.png}
\end{center}
\end{document}
